Added docs structure

.gitignore

@@ -1,7 +1,6 @@
 __pycache__
 *.pyc
 .vscode
-advLab.db
+
-server_setup.md
+db/
-db_backups
+server_setup.adoc
-import_files

README.adoc

@@ -0,0 +1,88 @@
+= AdvLabDB
+
+image:https://img.shields.io/badge/code%20style-black-000000.svg[link=https://github.com/psf/black] image:https://img.shields.io/badge/%20imports-isort-%231674b1?style=flat&labelColor=ef8336[link=https://pycqa.github.io/isort/]
+
+== Requirements
+You need to have Python version >=3.10 and Poetry installed. To install Poetry, follow the https://python-poetry.org/docs/#installation[official instructions].
+
+== Starting server
+// TODO: Update with Gunicorn
+
+IMPORTANT: Every following instruction has to be followed every time before starting the server if not mentioned otherwise.
+
+=== Update code and dependencies
+
+Navigate to the directory `advlabdb` where the repository is _already_ cloned (otherwise clone it) and run:
+
+[source,bash]
+----
+git pull
+----
+
+to pull the latest changes from the remote repository. Then run:
+
+[source,bash]
+----
+poetry install
+----
+
+to install (or update) all needed packages to the virtual environment.
+
+=== Enter the virtual environment
+
+Run:
+
+[source,bash]
+----
+poetry shell
+----
+
+'''
+
+=== Re(create) a test database
+
+WARNING: Running the following line *drops an eventually existing database*! The data in the database will be *lost*! This has to be done only if you are starting the server for the first time without an existing database or you want to *drop and recreate* the database.
+
+[source,bash]
+----
+python testDB.py
+----
+
+This (re-)creates the database with some elements for testing.
+
+'''
+
+=== Start test server
+
+Now you can start the server by running:
+
+[source,bash]
+----
+python run.py
+----
+
+This command will print out the URL for accessing the local server. For example:
+
+----
+* Running on http://127.0.0.1:5000/ (Press CTRL+C to quit)
+----
+
+This URL leads to the home page where you can login with this testing admin account:
+
+* email: \admin@advlabdb.de
+* password: admin
+
+NOTE: Obeviously, the email address is fake.
+
+== To-Do
+
+* Deactivate assistants account after a while if not assigned to experiments
+* Statistics + semester review with alerts
+* Production server configuration with Gunicorn
+* Documentation with Asciidoctor
+* Backups
+* Logging
+* Email integration + assistant reminder?
+* Students code for getting information and giving feedback
+* Licence (GNU AGPLv3?)
+* Privacy policy

README.md

@@ -1,62 +0,0 @@
-[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
-[![Imports: isort](https://img.shields.io/badge/%20imports-isort-%231674b1?style=flat&labelColor=ef8336)](https://pycqa.github.io/isort/)
-
-# Requirements
-You need to have Python version >=3.9 and Poetry installed. To install Poetry, follow the official instructions [here](https://python-poetry.org/docs/#installation).
-
-# Start server
-Every following instructions has to be followed every time before starting the server if not mentioned otherwise.
-
-Navigate to the directory `advlabdb` where the repository is cloned and run:
-
-```
-git pull
-```
-
-to pull the latest changes from the remote repository. Then run:
-
-```
-poetry install
-```
-
-to install (or update) all needed packages to the virtual environment. Now enter the virtual environment:
-
-```
-poetry shell
-```
-
-**ONLY IF** you are starting the server for the first time without an existing database or you want to **!drop and recreate!** the database then run:
-
-```
-# CAUTION, running this drops an existing database!
-python testDB.py
-```
-
-This (re-)creates the database with some elements for testing.
-
-Now you can start the server by running:
-```
-python run.py
-```
-
-This command will print out the URL for accessing the local server. For example:
-
-```
-* Running on http://127.0.0.1:5000/ (Press CTRL+C to quit)
-```
-
-This URL leads to the home page where you can login with this testing admin account:
-- email: admin@protonmail.com
-- password: admin
-
-# To-Do:
-- Deactivate assistants account after a while if not assigned to experiments
-- Email integration + assistant reminder?
-- Students code for getting information and giving feedback
-- Statistics + semester review with alerts
-- Logging
-- Documentation with Sphinx
-- Production server configuration
-- Backups
-- Licence (GNU AGPLv3?)
-- Privacy policy

advlabdb/__init__.py

@@ -18,7 +18,7 @@ app.config["SERVER_NAME"] = "127.0.0.1:5000"  # DEBUG
 app.config["SECRET_KEY"] = "dev"
 app.config["SECURITY_PASSWORD_SALT"] = "devSalt"  # os.environ.get("SECURITY_PASSWORD_SALT", "")
 
-app.config["SQLALCHEMY_DATABASE_URI"] = "sqlite:///../advLab.db"
+app.config["SQLALCHEMY_DATABASE_URI"] = "sqlite:///../db/advLab.db"
 app.config["SQLALCHEMY_TRACK_MODIFICATIONS"] = False
 
 db = SQLAlchemy(app)

advlabdb/adminModelViews.py

@@ -935,7 +935,7 @@ class ImportView(SecureAdminBaseView):
             f = form.file.data
             filename = secure_filename(f.filename)
 
-            directory = "import_files"
+            directory = "db/import_files"
             Path(directory).mkdir(exist_ok=True)
 
             filePath = directory + f"/{filename}"

advlabdb/configUtils.py

@@ -3,7 +3,7 @@ import json
 
 def getConfig(label):
     with open("config.json", "r") as f:
-        return json.load(f)[label]  # TODO error handling
+        return json.load(f)[label]  # TODO: error handling
 
 
 def setConfig(label, value, new=False):

advlabdb/database_import.py

@@ -258,16 +258,17 @@ def importFromFile(filePath):
             db.session.add(dbAppointment)
 
         # Backup
-        src = "advLab.db"
+        # TODO: Check existing dirs
-        dest = f"db_backups/before_{dbSemester.repr()}_import_{datetime.now().strftime('%d_%m_%Y_%H_%M_%S')}.db"
+        src = "db/advLab.db"
+        dest = f"db/backups/before_{dbSemester.repr()}_import_{datetime.now().strftime('%d_%m_%Y_%H_%M_%S')}.db"
         copy2(src, dest)
 
         show(f"Made a backup of the database before the import at {dest}")
 
         # Auto commit from the transaction context
     
-    src = "advLab.db"
+    src = "db/advLab.db"
-    dest = f"db_backups/after_{dbSemester.repr()}_import_{datetime.now().strftime('%d_%m_%Y_%H_%M_%S')}.db"
+    dest = f"db/backups/after_{dbSemester.repr()}_import_{datetime.now().strftime('%d_%m_%Y_%H_%M_%S')}.db"
     copy2(src, dest)
 
     show(f"Made a backup of the database after the import at {dest}")

advlabdb/routes.py

@@ -1,5 +1,5 @@
 from flask import flash, redirect, render_template, request, url_for
-from flask_security import auth_required, current_user
+from flask_security import auth_required, current_user, roles_required, roles_accepted
 
 from advlabdb import app
 from advlabdb.utils import setUserActiveSemester, userActiveSemester
@@ -32,3 +32,15 @@ def set_semester():
 
     red = request.referrer or url_for("index")
     return redirect(red)
+
+
+@app.route("/admin/docs")
+@roles_required("admin")
+def admin_docs():
+    return render_template("docs/admin.html")
+
+
+@app.route("/assistant/docs")
+@roles_accepted("admin", "assistant")
+def assistant_docs():
+    return render_template("docs/assistant.html")

docs/admin.adoc

@@ -0,0 +1,2 @@
+= Admin documentation
+// TODO

docs/assistant.adoc

@@ -0,0 +1,2 @@
+= Assistant documentation
+// TODO

poetry.lock

@@ -1,6 +1,6 @@
 [[package]]
 name = "black"
-version = "21.11b1"
+version = "21.12b0"
 description = "The uncompromising code formatter."
 category = "dev"
 optional = false
@@ -11,7 +11,6 @@ click = ">=7.1.2"
 mypy-extensions = ">=0.4.3"
 pathspec = ">=0.9.0,<1"
 platformdirs = ">=2"
-regex = ">=2021.4.4"
 tomli = ">=0.2.6,<2.0.0"
 typing-extensions = [
     {version = ">=3.10.0.0", markers = "python_version < \"3.10\""},
@@ -304,11 +303,11 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [[package]]
 name = "platformdirs"
-version = "2.4.0"
+version = "2.4.1"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.extras]
 docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"]
@@ -330,14 +329,6 @@ category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
-[[package]]
-name = "regex"
-version = "2021.11.10"
-description = "Alternative regular expression module, to replace re."
-category = "dev"
-optional = false
-python-versions = "*"
-
 [[package]]
 name = "rope"
 version = "0.22.0"
@@ -351,7 +342,7 @@ dev = ["build", "pytest", "pytest-timeout"]
 
 [[package]]
 name = "sqlalchemy"
-version = "1.4.27"
+version = "1.4.29"
 description = "Database Abstraction Library"
 category = "main"
 optional = false
@@ -383,7 +374,7 @@ sqlcipher = ["sqlcipher3-binary"]
 
 [[package]]
 name = "tomli"
-version = "1.2.2"
+version = "1.2.3"
 description = "A lil' TOML parser"
 category = "dev"
 optional = false
@@ -391,7 +382,7 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "typing-extensions"
-version = "4.0.0"
+version = "4.0.1"
 description = "Backported and Experimental Type Hints for Python 3.6+"
 category = "dev"
 optional = false
@@ -410,11 +401,11 @@ watchdog = ["watchdog"]
 
 [[package]]
 name = "wtforms"
-version = "3.0.0"
+version = "3.0.1"
 description = "Form validation and rendering for Python web development."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 MarkupSafe = "*"
@@ -429,8 +420,8 @@ content-hash = "7af5fe05c787894cba9c757b0d2838f6fe365e340e36cb841ce40dbccfd5431f
 
 [metadata.files]
 black = [
-    {file = "black-21.11b1-py3-none-any.whl", hash = "sha256:802c6c30b637b28645b7fde282ed2569c0cd777dbe493a41b6a03c1d903f99ac"},
+    {file = "black-21.12b0-py3-none-any.whl", hash = "sha256:a615e69ae185e08fdd73e4715e260e2479c861b5740057fde6e8b4e3b7dd589f"},
-    {file = "black-21.11b1.tar.gz", hash = "sha256:a042adbb18b3262faad5aff4e834ff186bb893f95ba3a8013f09de1e5569def2"},
+    {file = "black-21.12b0.tar.gz", hash = "sha256:77b80f693a569e2e527958459634f18df9b0ba2625ba4e0c2d5da5be42e6f2b3"},
 ]
 blinker = [
     {file = "blinker-1.4.tar.gz", hash = "sha256:471aee25f3992bd325afa3772f1063dbdbbca947a041b8b89466dc00d606f8b6"},
@@ -493,6 +484,7 @@ greenlet = [
     {file = "greenlet-1.1.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:97e5306482182170ade15c4b0d8386ded995a07d7cc2ca8f27958d34d6736497"},
     {file = "greenlet-1.1.2-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:e6a36bb9474218c7a5b27ae476035497a6990e21d04c279884eb10d9b290f1b1"},
     {file = "greenlet-1.1.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:abb7a75ed8b968f3061327c433a0fbd17b729947b400747c334a9c29a9af6c58"},
+    {file = "greenlet-1.1.2-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:b336501a05e13b616ef81ce329c0e09ac5ed8c732d9ba7e3e983fcc1a9e86965"},
     {file = "greenlet-1.1.2-cp310-cp310-win_amd64.whl", hash = "sha256:14d4f3cd4e8b524ae9b8aa567858beed70c392fdec26dbdb0a8a418392e71708"},
     {file = "greenlet-1.1.2-cp35-cp35m-macosx_10_14_x86_64.whl", hash = "sha256:17ff94e7a83aa8671a25bf5b59326ec26da379ace2ebc4411d690d80a7fbcf23"},
     {file = "greenlet-1.1.2-cp35-cp35m-manylinux1_x86_64.whl", hash = "sha256:9f3cba480d3deb69f6ee2c1825060177a22c7826431458c697df88e6aeb3caee"},
@@ -505,6 +497,7 @@ greenlet = [
     {file = "greenlet-1.1.2-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f9d29ca8a77117315101425ec7ec2a47a22ccf59f5593378fc4077ac5b754fce"},
     {file = "greenlet-1.1.2-cp36-cp36m-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:21915eb821a6b3d9d8eefdaf57d6c345b970ad722f856cd71739493ce003ad08"},
     {file = "greenlet-1.1.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:eff9d20417ff9dcb0d25e2defc2574d10b491bf2e693b4e491914738b7908168"},
+    {file = "greenlet-1.1.2-cp36-cp36m-musllinux_1_1_x86_64.whl", hash = "sha256:b8c008de9d0daba7b6666aa5bbfdc23dcd78cafc33997c9b7741ff6353bafb7f"},
     {file = "greenlet-1.1.2-cp36-cp36m-win32.whl", hash = "sha256:32ca72bbc673adbcfecb935bb3fb1b74e663d10a4b241aaa2f5a75fe1d1f90aa"},
     {file = "greenlet-1.1.2-cp36-cp36m-win_amd64.whl", hash = "sha256:f0214eb2a23b85528310dad848ad2ac58e735612929c8072f6093f3585fd342d"},
     {file = "greenlet-1.1.2-cp37-cp37m-macosx_10_14_x86_64.whl", hash = "sha256:b92e29e58bef6d9cfd340c72b04d74c4b4e9f70c9fa7c78b674d1fec18896dc4"},
@@ -513,6 +506,7 @@ greenlet = [
     {file = "greenlet-1.1.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:1e12bdc622676ce47ae9abbf455c189e442afdde8818d9da983085df6312e7a1"},
     {file = "greenlet-1.1.2-cp37-cp37m-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:8c790abda465726cfb8bb08bd4ca9a5d0a7bd77c7ac1ca1b839ad823b948ea28"},
     {file = "greenlet-1.1.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f276df9830dba7a333544bd41070e8175762a7ac20350786b322b714b0e654f5"},
+    {file = "greenlet-1.1.2-cp37-cp37m-musllinux_1_1_x86_64.whl", hash = "sha256:8c5d5b35f789a030ebb95bff352f1d27a93d81069f2adb3182d99882e095cefe"},
     {file = "greenlet-1.1.2-cp37-cp37m-win32.whl", hash = "sha256:64e6175c2e53195278d7388c454e0b30997573f3f4bd63697f88d855f7a6a1fc"},
     {file = "greenlet-1.1.2-cp37-cp37m-win_amd64.whl", hash = "sha256:b11548073a2213d950c3f671aa88e6f83cda6e2fb97a8b6317b1b5b33d850e06"},
     {file = "greenlet-1.1.2-cp38-cp38-macosx_10_14_x86_64.whl", hash = "sha256:9633b3034d3d901f0a46b7939f8c4d64427dfba6bbc5a36b1a67364cf148a1b0"},
@@ -521,6 +515,7 @@ greenlet = [
     {file = "greenlet-1.1.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e859fcb4cbe93504ea18008d1df98dee4f7766db66c435e4882ab35cf70cac43"},
     {file = "greenlet-1.1.2-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:00e44c8afdbe5467e4f7b5851be223be68adb4272f44696ee71fe46b7036a711"},
     {file = "greenlet-1.1.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ec8c433b3ab0419100bd45b47c9c8551248a5aee30ca5e9d399a0b57ac04651b"},
+    {file = "greenlet-1.1.2-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:2bde6792f313f4e918caabc46532aa64aa27a0db05d75b20edfc5c6f46479de2"},
     {file = "greenlet-1.1.2-cp38-cp38-win32.whl", hash = "sha256:288c6a76705dc54fba69fbcb59904ae4ad768b4c768839b8ca5fdadec6dd8cfd"},
     {file = "greenlet-1.1.2-cp38-cp38-win_amd64.whl", hash = "sha256:8d2f1fb53a421b410751887eb4ff21386d119ef9cde3797bf5e7ed49fb51a3b3"},
     {file = "greenlet-1.1.2-cp39-cp39-macosx_10_14_x86_64.whl", hash = "sha256:166eac03e48784a6a6e0e5f041cfebb1ab400b394db188c48b3a84737f505b67"},
@@ -529,6 +524,7 @@ greenlet = [
     {file = "greenlet-1.1.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:b1692f7d6bc45e3200844be0dba153612103db241691088626a33ff1f24a0d88"},
     {file = "greenlet-1.1.2-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:7227b47e73dedaa513cdebb98469705ef0d66eb5a1250144468e9c3097d6b59b"},
     {file = "greenlet-1.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7ff61ff178250f9bb3cd89752df0f1dd0e27316a8bd1465351652b1b4a4cdfd3"},
+    {file = "greenlet-1.1.2-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:0051c6f1f27cb756ffc0ffbac7d2cd48cb0362ac1736871399a739b2885134d3"},
     {file = "greenlet-1.1.2-cp39-cp39-win32.whl", hash = "sha256:f70a9e237bb792c7cc7e44c531fd48f5897961701cdaa06cf22fc14965c496cf"},
     {file = "greenlet-1.1.2-cp39-cp39-win_amd64.whl", hash = "sha256:013d61294b6cd8fe3242932c1c5e36e5d1db2c8afb58606c5a67efce62c1f5fd"},
     {file = "greenlet-1.1.2.tar.gz", hash = "sha256:e30f5ea4ae2346e62cedde8794a56858a67b878dd79f7df76a0767e356b1744a"},
@@ -637,8 +633,8 @@ pathspec = [
     {file = "pathspec-0.9.0.tar.gz", hash = "sha256:e564499435a2673d586f6b2130bb5b95f04a3ba06f81b8f895b651a3c76aabb1"},
 ]
 platformdirs = [
-    {file = "platformdirs-2.4.0-py3-none-any.whl", hash = "sha256:8868bbe3c3c80d42f20156f22e7131d2fb321f5bc86a2a345375c6481a67021d"},
+    {file = "platformdirs-2.4.1-py3-none-any.whl", hash = "sha256:1d7385c7db91728b83efd0ca99a5afb296cab9d0ed8313a45ed8ba17967ecfca"},
-    {file = "platformdirs-2.4.0.tar.gz", hash = "sha256:367a5e80b3d04d2428ffa76d33f124cf11e8fff2acdaa9b43d545f5c7d661ef2"},
+    {file = "platformdirs-2.4.1.tar.gz", hash = "sha256:440633ddfebcc36264232365d7840a970e75e1018d15b4327d11f91909045fda"},
 ]
 pycodestyle = [
     {file = "pycodestyle-2.8.0-py2.py3-none-any.whl", hash = "sha256:720f8b39dde8b293825e7ff02c475f3077124006db4f440dcbc9a20b76548a20"},
@@ -648,137 +644,61 @@ pyflakes = [
     {file = "pyflakes-2.4.0-py2.py3-none-any.whl", hash = "sha256:3bb3a3f256f4b7968c9c788781e4ff07dce46bdf12339dcda61053375426ee2e"},
     {file = "pyflakes-2.4.0.tar.gz", hash = "sha256:05a85c2872edf37a4ed30b0cce2f6093e1d0581f8c19d7393122da7e25b2b24c"},
 ]
-regex = [
-    {file = "regex-2021.11.10-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:9345b6f7ee578bad8e475129ed40123d265464c4cfead6c261fd60fc9de00bcf"},
-    {file = "regex-2021.11.10-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:416c5f1a188c91e3eb41e9c8787288e707f7d2ebe66e0a6563af280d9b68478f"},
-    {file = "regex-2021.11.10-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e0538c43565ee6e703d3a7c3bdfe4037a5209250e8502c98f20fea6f5fdf2965"},
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testDB.py

@@ -105,7 +105,7 @@ with app.app_context():
     user_datastore.create_role(name="assistant")
 
     user_datastore.create_user(
-        email="admin@protonmail.com",
+        email="admin@advlabdb.de",
         password=hash_password("admin"),
         roles=["admin"],
         first_name="Peter",