Fix markerspace

src/Particle.jl

@@ -1,3 +1,5 @@
+using StaticArrays: SVector
+
 mutable struct Particle
     id::Int64
 

src/ReCo.jl

@@ -11,15 +11,6 @@ export init_sim,
     OriginCompassEnv,
     COMCompassEnv
 
-using StaticArrays: SVector
-using JLD2: JLD2
-using Distributions: Uniform, Normal
-using ProgressMeter: ProgressMeter
-using CellListMap: CellListMap
-
-using Random: Random
-using Dates: Dates
-
 include("Error.jl")
 using .Error
 

src/Shape.jl

@@ -1,5 +1,7 @@
 module Shape
 
+using StaticArrays: SVector
+
 export center_of_mass,
     gyration_tensor_eigvals_ratio, gyration_tensor_eigvecs, elliptical_distance
 

src/data.jl

@@ -1,3 +1,6 @@
+using Dates: Dates
+using JLD2: JLD2
+
 struct SimConsts
     n_particles::Int64
     v₀::Float64

src/run.jl

@@ -1,3 +1,9 @@
+using CellListMap: CellListMap
+using Dates: Dates
+using JLD2: JLD2
+using Random: Random
+using StaticArrays: SVector
+
 const DEFAULT_SNAPSHOT_AT = 0.1
 const DEFAULT_SEED = 42
 const DEFAULT_N_BUNDLE_SNAPSHOTS = 100

src/setup.jl

@@ -1,3 +1,8 @@
+using Dates: Dates
+using Distributions: Uniform
+using JLD2: JLD2
+using StaticArrays: SVector
+
 const DEFAULT_PACKING_FRACTION = 0.5
 const DEFAULT_δt = 1e-5
 const DEFAULT_SKIN_TO_INTERACTION_RADIUS_RATIO = 3.0

src/simulation.jl

@@ -1,3 +1,8 @@
+using Distributions: Normal
+using ProgressMeter: ProgressMeter
+using StaticArrays: SVector
+using CellListMap: CellListMap
+
 function rand_normal01()
     return rand(Normal(0, 1))
 end

visualization/Animation.jl

@@ -54,12 +54,13 @@ function animate_bundle!(args, sim_consts::ReCo.SimConsts)
         end
 
         if args.n_bundle == 1 && bundle_snapshot == 1
+            println("OK")
             scatter!(
                 args.ax,
                 args.particle_xs,
                 args.particle_ys;
                 markersize=2 * sim_consts.particle_radius,
-                markerspace=SceneSpace,
+                markerspace=:data,
                 color=args.particle_colors,
             )
 
@@ -68,7 +69,7 @@ function animate_bundle!(args, sim_consts::ReCo.SimConsts)
                     args.ax,
                     args.center_of_mass_point;
                     markersize=6 * sim_consts.particle_radius,
-                    markerspace=SceneSpace,
+                    markerspace=:data,
                     color=ColorSchemes.ColorTypes.RGBA(1.0, 1.0, 1.0, 0.6),
                 )
             end
@@ -79,7 +80,7 @@ function animate_bundle!(args, sim_consts::ReCo.SimConsts)
                     args.particle_xs,
                     args.particle_ys;
                     markersize=2 * sim_consts.interaction_radius,
-                    markerspace=SceneSpace,
+                    markerspace=:data,
                     color=args.interaction_colors,
                 )
             end
@@ -90,7 +91,7 @@ function animate_bundle!(args, sim_consts::ReCo.SimConsts)
                     args.particle_xs,
                     args.particle_ys;
                     markersize=2 * sim_consts.skin_radius,
-                    markerspace=SceneSpace,
+                    markerspace=:data,
                     color=args.skin_colors,
                 )
             end

visualization/Manifest.toml

@@ -142,9 +142,9 @@ version = "1.44.6"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "dc4405cee4b2fe9e1108caec2d760b7ea758eca2"
+git-tree-sha1 = "e7ff6cadf743c098e08fca25c91103ee4303c9bb"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.15.5"
+version = "1.15.6"
 
 [[deps.ChangesOfVariables]]
 deps = ["ChainRulesCore", "LinearAlgebra", "Test"]
@@ -274,10 +274,10 @@ uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d"
 version = "0.4.0"
 
 [[deps.DiffResults]]
-deps = ["StaticArrays"]
+deps = ["StaticArraysCore"]
-git-tree-sha1 = "c18e98cba888c6c25d1c3b048e4b3380ca956805"
+git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621"
 uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
-version = "1.0.3"
+version = "1.1.0"
 
 [[deps.DiffRules]]
 deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"]
@@ -291,9 +291,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[deps.Distributions]]
 deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "70e9677e1195e7236763042194e3fbf147fdb146"
+git-tree-sha1 = "0d7d213133d948c56e8c2d9f4eab0293491d8e4a"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.74"
+version = "0.25.75"
 
 [[deps.DocStringExtensions]]
 deps = ["LibGit2"]
@@ -1062,9 +1062,9 @@ version = "0.5.11"
 
 [[deps.Pango_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "3a121dfbba67c94a5bec9dde613c3d0cbcf3a12b"
+git-tree-sha1 = "84a314e3926ba9ec66ac097e3635e270986b0f10"
 uuid = "36c8627f-9965-5494-a995-c6b170f724f3"
-version = "1.50.3+0"
+version = "1.50.9+0"
 
 [[deps.Parameters]]
 deps = ["OrderedCollections", "UnPack"]
@@ -1172,7 +1172,7 @@ version = "0.4.3"
 
 [[deps.ReCo]]
 deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
-git-tree-sha1 = "1b8333b6d62808072ef0d54a90eddd85ad557193"
+git-tree-sha1 = "871954c9b32431f0c8fe3daa20302cdebdf5ad07"
 repo-rev = "main"
 repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
 uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
@@ -1354,14 +1354,14 @@ version = "0.7.7"
 
 [[deps.StaticArrays]]
 deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"]
-git-tree-sha1 = "efa8acd030667776248eabb054b1836ac81d92f0"
+git-tree-sha1 = "2189eb2c1f25cb3f43e5807f26aa864052e50c17"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.5.7"
+version = "1.5.8"
 
 [[deps.StaticArraysCore]]
-git-tree-sha1 = "ec2bd695e905a3c755b33026954b119ea17f2d22"
+git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a"
 uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
-version = "1.3.0"
+version = "1.4.0"
 
 [[deps.Statistics]]
 deps = ["LinearAlgebra", "SparseArrays"]

visualization/SnapshotPlot.jl

@@ -91,7 +91,7 @@ function plot_snapshot(
         particle_xs,
         particle_ys;
         markersize=2 * sim_consts.particle_radius,
-        markerspace=SceneSpace,
+        markerspace=:data,
         color=particle_colors,
     )
 
@@ -100,7 +100,7 @@ function plot_snapshot(
             ax,
             Point(center_of_mass);
             markersize=6 * sim_consts.particle_radius,
-            markerspace=SceneSpace,
+            markerspace=:data,
             color=ColorSchemes.ColorTypes.RGBA(0.0, 0.0, 0.0, 0.6),
         )
     end