diff --git a/README.adoc b/README.adoc
index 2f9c5b4..629e432 100644
--- a/README.adoc
+++ b/README.adoc
@@ -38,8 +38,9 @@ If specified otherwise, an environment in a subdirectory has to be activated ins
 
 [source,julia]
 ----
+cd("SUBDIRECTORY")
 using Pkg
-Pkg.activate("SUBDIRECTORY")
+Pkg.activate(".")
 ----
 
 === Install/update dependencies
@@ -97,7 +98,7 @@ To generate an animation of a simulation, run the following:
 
 [source,julia]
 ----
-include("visualization/Animation.jl")
+include("Animation.jl")
 using .Animation
 animate(sim_dir)
 ----
@@ -110,7 +111,7 @@ To plot only one snapshot of a simulation, run the following:
 
 [source,julia]
 ----
-include("visualization/SnapshotPlot.jl")
+include("SnapshotPlot.jl")
 using .SnapshotPlot
 plot_snapshot(sim_dir)
 ----
@@ -152,7 +153,7 @@ To plot the rewards, activate the environment of the subdirectory `visualization
 
 [source,julia]
 ----
-include("visualization/RewardsPlot.jl")
+include("RewardsPlot.jl")
 using .RewardsPlot
 plot_rewards(rl_dir)
 ----
@@ -165,7 +166,7 @@ To plot the mean of kappa as the ratio of the eigenvalues of the gyration tensor
 
 [source,julia]
 ----
-include("analysis/mean_kappa.jl")
+include("mean_kappa.jl")
 plot_mean_κ(; rl_dir=rl_dir, n_last_episodes=N_LAST_EPISODES)
 ----
 
@@ -179,7 +180,7 @@ First, activate the environment of the subdirectory `analysis`.
 
 [source,julia]
 ----
-include("analysis/mean_squared_displacement.jl")
+include("mean_squared_displacement.jl")
 run_msd_analysis()
 run_random_walk()
 ----
@@ -190,7 +191,7 @@ The output is `exports/graphics/mean_squared_displacement.pdf` and `exports/grap
 
 [source,julia]
 ----
-include("analysis/radial_distribution_function/radial_distribution_function.jl")
+include("radial_distribution_function/radial_distribution_function.jl")
 run_radial_distribution_analysis()
 ----
 
@@ -200,7 +201,7 @@ The output is `exports/graphics/radial_distribution.pdf` and `exports/graphics/r
 
 [source,julia]
 ----
-include("analysis/reward_discount_analysis.jl")
+include("reward_discount_analysis.jl")
 run_reward_discount_analysis()
 ----
 
diff --git a/analysis/Manifest.toml b/analysis/Manifest.toml
index 3c4604d..5071f2e 100644
--- a/analysis/Manifest.toml
+++ b/analysis/Manifest.toml
@@ -1177,9 +1177,9 @@ version = "0.4.3"
 
 [[deps.ReCo]]
 deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
-git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
+git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
 repo-rev = "main"
-repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
+repo-url = ".."
 uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
 version = "0.5.0"
 
diff --git a/graphics/CairoMakie_graphics/Manifest.toml b/graphics/CairoMakie_graphics/Manifest.toml
index adf07f5..00e8b5f 100644
--- a/graphics/CairoMakie_graphics/Manifest.toml
+++ b/graphics/CairoMakie_graphics/Manifest.toml
@@ -1136,9 +1136,9 @@ version = "0.4.3"
 
 [[deps.ReCo]]
 deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
-git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
+git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
 repo-rev = "main"
-repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
+repo-url = "../.."
 uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
 version = "0.5.0"
 
diff --git a/graphics/Luxor_graphics/Manifest.toml b/graphics/Luxor_graphics/Manifest.toml
index bc97e2d..dcbf75a 100644
--- a/graphics/Luxor_graphics/Manifest.toml
+++ b/graphics/Luxor_graphics/Manifest.toml
@@ -931,9 +931,9 @@ version = "1.5.3"
 
 [[deps.ReCo]]
 deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
-git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
+git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
 repo-rev = "main"
-repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
+repo-url = "../.."
 uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
 version = "0.5.0"
 
diff --git a/graphics/Luxor_graphics/center_of_mass.jl b/graphics/Luxor_graphics/center_of_mass.jl
index 9967b78..56f8dd6 100644
--- a/graphics/Luxor_graphics/center_of_mass.jl
+++ b/graphics/Luxor_graphics/center_of_mass.jl
@@ -33,7 +33,7 @@ function gen_COM_graphics()
 
     ##
 
-    graphics_export_dir = "exports/graphics/COM"
+    graphics_export_dir = "../../exports/graphics/COM"
     mkpath(graphics_export_dir)
 
     Drawing(box_length, box_height, "$graphics_export_dir/linear.pdf")
diff --git a/graphics/Luxor_graphics/periodic_boundary_conditions.jl b/graphics/Luxor_graphics/periodic_boundary_conditions.jl
index 34d489c..f8becdf 100644
--- a/graphics/Luxor_graphics/periodic_boundary_conditions.jl
+++ b/graphics/Luxor_graphics/periodic_boundary_conditions.jl
@@ -9,7 +9,7 @@ function gen_periodic_boundary_conditions_graphics()
 
     drawing_box_length = 300
 
-    graphics_export_dir = "exports/graphics"
+    graphics_export_dir = "../../exports/graphics"
     mkpath(graphics_export_dir)
 
     Drawing(
diff --git a/graphics/Luxor_graphics/radial_distribution.jl b/graphics/Luxor_graphics/radial_distribution.jl
index e7a1648..5084fa2 100644
--- a/graphics/Luxor_graphics/radial_distribution.jl
+++ b/graphics/Luxor_graphics/radial_distribution.jl
@@ -9,7 +9,7 @@ function gen_rdf_graphics()
 
     box_length = 100
 
-    graphics_export_dir = "exports/graphics"
+    graphics_export_dir = "../../exports/graphics"
     mkpath(graphics_export_dir)
 
     Drawing(box_length, box_length, "$graphics_export_dir/rdf_shells.pdf")
diff --git a/graphics/Luxor_graphics/verlet_and_cell_lists.jl b/graphics/Luxor_graphics/verlet_and_cell_lists.jl
index 1dbd019..36e429a 100644
--- a/graphics/Luxor_graphics/verlet_and_cell_lists.jl
+++ b/graphics/Luxor_graphics/verlet_and_cell_lists.jl
@@ -9,7 +9,7 @@ function gen_verlet_and_cell_lists_graphics()
 
     box_length = 100
 
-    graphics_export_dir = "exports/graphics"
+    graphics_export_dir = "../../exports/graphics"
     mkpath(graphics_export_dir)
 
     Drawing(box_length, box_length, "$graphics_export_dir/verlet_and_cell_lists.pdf")
diff --git a/performance/Benchmark.jl b/performance/Benchmark.jl
index 8866335..8d8cade 100644
--- a/performance/Benchmark.jl
+++ b/performance/Benchmark.jl
@@ -26,7 +26,7 @@ function run_benchmarks(
 
     display(benchmark)
 
-    open("exports/benchmark.txt", "a+") do f
+    open("../exports/benchmark.txt", "a+") do f
         JSON3.pretty(
             f,
             Dict(
diff --git a/performance/Manifest.toml b/performance/Manifest.toml
index b4ae773..fefd833 100644
--- a/performance/Manifest.toml
+++ b/performance/Manifest.toml
@@ -965,9 +965,9 @@ version = "1.5.3"
 
 [[deps.ReCo]]
 deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
-git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
+git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
 repo-rev = "main"
-repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
+repo-url = ".."
 uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
 version = "0.5.0"
 
diff --git a/scripts/projects.txt b/scripts/projects.txt
index 3a04ecf..dcd3697 100644
--- a/scripts/projects.txt
+++ b/scripts/projects.txt
@@ -1,7 +1,7 @@
 .
-test
 analysis
 graphics/CairoMakie_graphics
 graphics/Luxor_graphics
 performance
+test
 visualization
diff --git a/scripts/update.jl b/scripts/update.jl
index 7c544e3..8a3dbe8 100644
--- a/scripts/update.jl
+++ b/scripts/update.jl
@@ -2,9 +2,11 @@ using Pkg: Pkg
 
 function update()
     projects = readlines("scripts/projects.txt")
+    base_dir = pwd()
 
     for project in projects
-        Pkg.activate(project)
+        cd(joinpath(base_dir, project))
+        Pkg.activate(".")
         Pkg.update()
     end
 
diff --git a/visualization/Animation.jl b/visualization/Animation.jl
index ae63461..8bf0869 100644
--- a/visualization/Animation.jl
+++ b/visualization/Animation.jl
@@ -54,7 +54,6 @@ function animate_bundle!(args, sim_consts::ReCo.SimConsts)
         end
 
         if args.n_bundle == 1 && bundle_snapshot == 1
-            println("OK")
             scatter!(
                 args.ax,
                 args.particle_xs,
diff --git a/visualization/Manifest.toml b/visualization/Manifest.toml
index a10ed7e..446c6a9 100644
--- a/visualization/Manifest.toml
+++ b/visualization/Manifest.toml
@@ -1172,9 +1172,9 @@ version = "0.4.3"
 
 [[deps.ReCo]]
 deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
-git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
+git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
 repo-rev = "main"
-repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
+repo-url = ".."
 uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
 version = "0.5.0"
 
diff --git a/visualization/common_CairoMakie.jl b/visualization/common_CairoMakie.jl
index d183db6..7c447bc 100644
--- a/visualization/common_CairoMakie.jl
+++ b/visualization/common_CairoMakie.jl
@@ -22,7 +22,7 @@ function set_gaps!(fig::Figure)
     return nothing
 end
 
-function save_fig(filename::String, fig::Figure; parent_dir="exports/graphics")
+function save_fig(filename::String, fig::Figure; parent_dir="../exports/graphics")
     mkpath(parent_dir)
 
     save("$parent_dir/$filename", fig; pt_per_unit=1)