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@simd only in innermost loops

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Mo 2022-05-20 02:05:10 +02:00
parent 09684db724
commit ce4abeae5a
3 changed files with 74 additions and 56 deletions
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2
.gitignore vendored
View file

@ -1,4 +1,4 @@
exports
exports/
# Profiling
*.mem

126
Manifest.toml
View file

@ -25,9 +25,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
[[deps.ArrayInterface]]
deps = ["Compat", "IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"]
git-tree-sha1 = "c933ce606f6535a7c7b98e1d86d5d1014f730596"
git-tree-sha1 = "81f0cb60dc994ca17f68d9fb7c942a5ae70d9ee4"
uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
version = "5.0.7"
version = "5.0.8"
[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
@ -54,9 +54,15 @@ version = "0.4.2"
[[deps.CUDA]]
deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "TimerOutputs"]
git-tree-sha1 = "ba75320aaa092b3e17c020a2d8b9e0a572dbfa6a"
git-tree-sha1 = "19fb33957a5f85efb3cc10e70cf4dd4e30174ac9"
uuid = "052768ef-5323-5732-b1bb-66c8b64840ba"
version = "3.9.0"
version = "3.10.0"
[[deps.Calculus]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad"
uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9"
version = "0.5.1"
[[deps.CellListMap]]
deps = ["DocStringExtensions", "LinearAlgebra", "Parameters", "ProgressMeter", "Random", "Setfield", "StaticArrays"]
@ -66,9 +72,9 @@ version = "0.7.13"
[[deps.ChainRules]]
deps = ["ChainRulesCore", "Compat", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics"]
git-tree-sha1 = "cd313dab8ec7be4a6438573d34018a032f8bebce"
git-tree-sha1 = "de68815ccf15c7d3e3e3338f0bd3a8a0528f9b9f"
uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
version = "1.28.3"
version = "1.33.0"
[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
@ -78,9 +84,9 @@ version = "1.14.0"
[[deps.ChangesOfVariables]]
deps = ["ChainRulesCore", "LinearAlgebra", "Test"]
git-tree-sha1 = "bf98fa45a0a4cee295de98d4c1462be26345b9a1"
git-tree-sha1 = "1e315e3f4b0b7ce40feded39c73049692126cf53"
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version = "0.1.2"
version = "0.1.3"
[[deps.CircularArrayBuffers]]
deps = ["Adapt"]
@ -96,9 +102,9 @@ version = "0.7.0"
[[deps.ColorTypes]]
deps = ["FixedPointNumbers", "Random"]
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git-tree-sha1 = "a985dc37e357a3b22b260a5def99f3530fb415d3"
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version = "0.11.2"
[[deps.ColorVectorSpace]]
deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "TensorCore"]
@ -158,9 +164,9 @@ version = "1.10.0"
[[deps.DataStructures]]
deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
git-tree-sha1 = "3daef5523dd2e769dad2365274f760ff5f282c7d"
git-tree-sha1 = "cc1a8e22627f33c789ab60b36a9132ac050bbf75"
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
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version = "0.18.12"
[[deps.DataValueInterfaces]]
git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6"
@ -199,9 +205,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
[[deps.Distributions]]
deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "221ff6c6c9ede484e9f8be4974697187c06eb06b"
git-tree-sha1 = "8a6b49396a4058771c5c072239b2e0a76e2e898c"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.55"
version = "0.25.58"
[[deps.DocStringExtensions]]
deps = ["LibGit2"]
@ -213,6 +219,12 @@ version = "0.8.6"
deps = ["ArgTools", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
[[deps.DualNumbers]]
deps = ["Calculus", "NaNMath", "SpecialFunctions"]
git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566"
uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74"
version = "0.6.8"
[[deps.EarCut_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "3f3a2501fa7236e9b911e0f7a588c657e822bb6d"
@ -227,9 +239,9 @@ version = "1.2.9"
[[deps.EllipsisNotation]]
deps = ["ArrayInterface"]
git-tree-sha1 = "d064b0340db45d48893e7604ec95e7a2dc9da904"
git-tree-sha1 = "010c3f9692344e56d05793311dfe554b0d351d79"
uuid = "da5c29d0-fa7d-589e-88eb-ea29b0a81949"
version = "1.5.0"
version = "1.5.1"
[[deps.ExprTools]]
git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d"
@ -238,9 +250,9 @@ version = "0.1.8"
[[deps.FileIO]]
deps = ["Pkg", "Requires", "UUIDs"]
git-tree-sha1 = "80ced645013a5dbdc52cf70329399c35ce007fae"
git-tree-sha1 = "9267e5f50b0e12fdfd5a2455534345c4cf2c7f7a"
uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
version = "1.13.0"
version = "1.14.0"
[[deps.FillArrays]]
deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
@ -262,9 +274,9 @@ version = "0.12.10"
[[deps.ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "34e6147e7686a101c245f12dba43b743c7afda96"
git-tree-sha1 = "2f18915445b248731ec5db4e4a17e451020bf21e"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
version = "0.10.27"
version = "0.10.30"
[[deps.FreeType]]
deps = ["CEnum", "FreeType2_jll"]
@ -301,9 +313,9 @@ version = "8.3.2"
[[deps.GPUCompiler]]
deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"]
git-tree-sha1 = "556190e1e0ea3e37d83059fc9aa576f1e2104375"
git-tree-sha1 = "d8c5999631e1dc18d767883f621639c838f8e632"
uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
version = "0.14.1"
version = "0.15.2"
[[deps.GeometryBasics]]
deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
@ -311,11 +323,17 @@ git-tree-sha1 = "83ea630384a13fc4f002b77690bc0afeb4255ac9"
uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
version = "0.4.2"
[[deps.HypergeometricFunctions]]
deps = ["DualNumbers", "LinearAlgebra", "SpecialFunctions", "Test"]
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uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
version = "0.3.10"
[[deps.IRTools]]
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version = "0.4.6"
[[deps.IfElse]]
git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
@ -340,15 +358,15 @@ version = "0.5.4"
[[deps.Intervals]]
deps = ["Dates", "Printf", "RecipesBase", "Serialization", "TimeZones"]
git-tree-sha1 = "323a38ed1952d30586d0fe03412cde9399d3618b"
git-tree-sha1 = "b993074580045d1551d30990dc0fa5ba6feef92b"
uuid = "d8418881-c3e1-53bb-8760-2df7ec849ed5"
version = "1.5.0"
version = "1.6.0"
[[deps.InverseFunctions]]
deps = ["Test"]
git-tree-sha1 = "91b5dcf362c5add98049e6c29ee756910b03051d"
git-tree-sha1 = "336cc738f03e069ef2cac55a104eb823455dca75"
uuid = "3587e190-3f89-42d0-90ee-14403ec27112"
version = "0.1.3"
version = "0.1.4"
[[deps.IrrationalConstants]]
git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151"
@ -385,15 +403,15 @@ version = "0.8.4"
[[deps.LLVM]]
deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
git-tree-sha1 = "c9b86064be5ae0f63e50816a5a90b08c474507ae"
git-tree-sha1 = "c8d47589611803a0f3b4813d9e267cd4e3dbcefb"
uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
version = "4.9.1"
version = "4.11.1"
[[deps.LLVMExtra_jll]]
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"]
git-tree-sha1 = "5558ad3c8972d602451efe9d81c78ec14ef4f5ef"
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"]
git-tree-sha1 = "771bfe376249626d3ca12bcd58ba243d3f961576"
uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
version = "0.0.14+2"
version = "0.0.16+0"
[[deps.LaTeXStrings]]
git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996"
@ -429,9 +447,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
[[deps.LogExpFunctions]]
deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "44a7b7bb7dd1afe12bac119df6a7e540fa2c96bc"
git-tree-sha1 = "09e4b894ce6a976c354a69041a04748180d43637"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.13"
version = "0.3.15"
[[deps.Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
@ -482,9 +500,9 @@ uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
[[deps.NNlib]]
deps = ["Adapt", "ChainRulesCore", "Compat", "LinearAlgebra", "Pkg", "Requires", "Statistics"]
git-tree-sha1 = "a59a614b8b4ea6dc1dcec8c6514e251f13ccbe10"
git-tree-sha1 = "f89de462a7bc3243f95834e75751d70b3a33e59d"
uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
version = "0.8.4"
version = "0.8.5"
[[deps.NNlibCUDA]]
deps = ["CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics"]
@ -521,9 +539,9 @@ version = "1.4.1"
[[deps.PDMats]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "3114946c67ef9925204cc024a73c9e679cebe0d7"
git-tree-sha1 = "027185efff6be268abbaf30cfd53ca9b59e3c857"
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version = "0.11.10"
[[deps.Parameters]]
deps = ["OrderedCollections", "UnPack"]
@ -682,15 +700,15 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
[[deps.SpecialFunctions]]
deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
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[[deps.Static]]
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version = "0.6.3"
version = "0.6.5"
[[deps.StaticArrays]]
deps = ["LinearAlgebra", "Random", "Statistics"]
@ -715,16 +733,16 @@ uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.33.16"
[[deps.StatsFuns]]
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git-tree-sha1 = "5950925ff997ed6fb3e985dcce8eb1ba42a0bbe7"
deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"]
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version = "1.0.1"
[[deps.StructArrays]]
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git-tree-sha1 = "e75d82493681dfd884a357952bbd7ab0608e1dc3"
uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
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version = "0.6.7"
[[deps.SuiteSparse]]
deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
@ -768,9 +786,9 @@ version = "1.7.3"
[[deps.TimerOutputs]]
deps = ["ExprTools", "Printf"]
git-tree-sha1 = "11db03dd5bbc0d2b57a570d228a0f34538c586b1"
git-tree-sha1 = "7638550aaea1c9a1e86817a231ef0faa9aca79bd"
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version = "0.5.19"
[[deps.TranscodingStreams]]
deps = ["Random", "Test"]
@ -792,9 +810,9 @@ uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
[[deps.UnicodePlots]]
deps = ["ColorTypes", "Contour", "Crayons", "Dates", "FileIO", "FreeTypeAbstraction", "LinearAlgebra", "MarchingCubes", "NaNMath", "Printf", "SparseArrays", "StaticArrays", "StatsBase", "Unitful"]
git-tree-sha1 = "30cdd71bd78478ba19835466c6e2a52ad776d800"
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version = "2.11.1"
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@ -814,9 +832,9 @@ uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
[[deps.Zygote]]
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2
analysis/mean_squared_displacement.jl
View file

@ -95,7 +95,7 @@ function mean_squared_displacement(;
mean_sq_displacements = zeros(Float64, (length(ts), n_v₀s))
@simd for v₀_ind in 1:n_v₀s
for v₀_ind in 1:n_v₀s
for sim_ind in 1:n_simulations
sim_dir = sim_dirs[sim_ind, v₀_ind]