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Added elliptical distance
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1 changed files with 29 additions and 3 deletions
32
src/Shape.jl
32
src/Shape.jl
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@ -1,20 +1,23 @@
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module Shape
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module Shape
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export center_of_mass, gyration_tensor_eigvals_ratio
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export center_of_mass,
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gyration_tensor_eigvals_ratio, gyration_tensor_eigvecs, elliptical_distance
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using StaticArrays: SVector, SMatrix
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using StaticArrays: SVector, SMatrix
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using LinearAlgebra: eigvals, Hermitian
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using LinearAlgebra: eigvals, eigvecs, Hermitian, dot
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using ..ReCo: Particle, restrict_coordinate, restrict_coordinates
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using ..ReCo: Particle, restrict_coordinate, restrict_coordinates
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function project_to_unit_circle(x::Float64, half_box_len::Float64)
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function project_to_unit_circle(x::Float64, half_box_len::Float64)
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φ = (x + half_box_len) * π / half_box_len
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φ = (x + half_box_len) * π / half_box_len
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si, co = sincos(φ)
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si, co = sincos(φ)
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return SVector(co, si)
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return SVector(co, si)
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end
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end
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function project_back_from_unit_circle(θ::T, half_box_len::Float64) where {T<:Real}
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function project_back_from_unit_circle(θ::T, half_box_len::Float64) where {T<:Real}
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x = θ * half_box_len / π - half_box_len
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x = θ * half_box_len / π - half_box_len
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return restrict_coordinate(x, half_box_len)
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return restrict_coordinate(x, half_box_len)
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end
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end
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@ -87,8 +90,31 @@ function gyration_tensor(particles::Vector{Particle}, half_box_len::Float64)
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end
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end
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function gyration_tensor_eigvals_ratio(particles::Vector{Particle}, half_box_len::Float64)
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function gyration_tensor_eigvals_ratio(particles::Vector{Particle}, half_box_len::Float64)
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ev = eigvals(gyration_tensor(particles, half_box_len)) # Eigenvalues are sorted
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g_tensor = gyration_tensor(particles, half_box_len)
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ev = eigvals(g_tensor) # Eigenvalues are sorted
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return ev[1] / ev[2]
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return ev[1] / ev[2]
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end
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end
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function gyration_tensor_eigvecs(particles::Vector{Particle}, half_box_len::Float64)
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g_tensor = gyration_tensor(particles, half_box_len)
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eig_vecs = eigvecs(g_tensor)
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v1 = eig_vecs[:, 1]
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v2 = eig_vecs[:, 2]
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return (v1, v2)
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end
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function elliptical_distance(
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particle::Particle,
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gyration_tensor_eigvec_to_smaller_eigval::SVector{2,Float64},
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gyration_tensor_eigvec_to_bigger_eigval::SVector{2,Float64},
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goal_gyration_tensor_eigvals_ratio::Float64,
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)
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cx′ = dot(particle.c, gyration_tensor_eigvec_to_bigger_eigval)
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cy′ = dot(particle.c, gyration_tensor_eigvec_to_smaller_eigval)
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return cx′^2 + (cy′ / goal_gyration_tensor_eigvals_ratio)^2
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end
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end # module
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end # module
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