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Update README with changes
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16
README.adoc
16
README.adoc
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@ -121,11 +121,11 @@ The documentation of `run_rl` includes all possible optional arguments.
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env_helper.shared.agent.policy.learner.approximator.table
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env_helper.shared.agent.policy.learner.approximator.table
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----
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----
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To generate a LaTeX table with the states and actions combintation names for the Q-matrix, run the following:
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To generate a LaTeX table with the states and actions combintation names for the Q-matrix, run the following after activating the environment in `ReCo.jl/analysis`:
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[source,julia]
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[source,julia]
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----
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----
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include("analysis/Q_matrix_latex_export.jl")
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include("Q_matrix_latex_export.jl")
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export_q_matrix(env_helper, FILENAME_WITHOUT_EXTENSION)
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export_q_matrix(env_helper, FILENAME_WITHOUT_EXTENSION)
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----
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----
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@ -158,11 +158,11 @@ The function's documentation explains where the output is placed.
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=== Mean kappa
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=== Mean kappa
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To plot the mean of kappa as the ratio of the eigenvalues of the gyration tensor, run the following:
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To plot the mean of kappa as the ratio of the eigenvalues of the gyration tensor, run the following after activating the environment in `ReCo.jl/analysis`:
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[source,julia]
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[source,julia]
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----
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----
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include("analysis/mean_kappa.jl")
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include("mean_kappa.jl")
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plot_mean_κ(; rl_dir=rl_dir, n_last_episodes=N_LAST_EPISODES)
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plot_mean_κ(; rl_dir=rl_dir, n_last_episodes=N_LAST_EPISODES)
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----
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----
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@ -170,11 +170,13 @@ plot_mean_κ(; rl_dir=rl_dir, n_last_episodes=N_LAST_EPISODES)
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== Run analysis
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== Run analysis
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First, `cd` into and activate the environment in `ReCo.jl/analysis`.
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=== Mean squared displacement and random walk
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=== Mean squared displacement and random walk
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[source,julia]
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[source,julia]
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----
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----
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include("analysis/mean_squared_displacement.jl")
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include("mean_squared_displacement.jl")
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run_msd_analysis()
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run_msd_analysis()
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run_random_walk()
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run_random_walk()
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----
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----
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@ -185,7 +187,7 @@ The output is `ReCo.jl/exports/graphics/mean_squared_displacement.pdf` and `ReCo
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[source,julia]
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[source,julia]
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----
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----
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include("analysis/radial_distribution_function/radial_distribution_function.jl")
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include("radial_distribution_function/radial_distribution_function.jl")
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run_radial_distribution_analysis()
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run_radial_distribution_analysis()
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----
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----
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@ -195,7 +197,7 @@ The output is `ReCo.jl/exports/graphics/radial_distribution.pdf` and `ReCo.jl/ex
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[source,julia]
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[source,julia]
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----
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----
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include("analysis/reward_discount_analysis.jl")
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include("reward_discount_analysis.jl")
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run_reward_discount_analysis()
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run_reward_discount_analysis()
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----
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----
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