mo8it/ReCo.jl
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Fix deps and path to exports

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Mo 2022-09-25 17:56:00 +02:00
parent d73cd9b8d9
commit bea854f360
15 changed files with 29 additions and 27 deletions
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17
README.adoc
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@ -38,8 +38,9 @@ If specified otherwise, an environment in a subdirectory has to be activated ins
[source,julia]
----
cd("SUBDIRECTORY")
using Pkg
Pkg.activate("SUBDIRECTORY")
Pkg.activate(".")
----
=== Install/update dependencies
@ -97,7 +98,7 @@ To generate an animation of a simulation, run the following:
[source,julia]
----
include("visualization/Animation.jl")
include("Animation.jl")
using .Animation
animate(sim_dir)
----
@ -110,7 +111,7 @@ To plot only one snapshot of a simulation, run the following:
[source,julia]
----
include("visualization/SnapshotPlot.jl")
include("SnapshotPlot.jl")
using .SnapshotPlot
plot_snapshot(sim_dir)
----
@ -152,7 +153,7 @@ To plot the rewards, activate the environment of the subdirectory `visualization
[source,julia]
----
include("visualization/RewardsPlot.jl")
include("RewardsPlot.jl")
using .RewardsPlot
plot_rewards(rl_dir)
----
@ -165,7 +166,7 @@ To plot the mean of kappa as the ratio of the eigenvalues of the gyration tensor
[source,julia]
----
include("analysis/mean_kappa.jl")
include("mean_kappa.jl")
plot_mean_κ(; rl_dir=rl_dir, n_last_episodes=N_LAST_EPISODES)
----
@ -179,7 +180,7 @@ First, activate the environment of the subdirectory `analysis`.
[source,julia]
----
include("analysis/mean_squared_displacement.jl")
include("mean_squared_displacement.jl")
run_msd_analysis()
run_random_walk()
----
@ -190,7 +191,7 @@ The output is `exports/graphics/mean_squared_displacement.pdf` and `exports/grap
[source,julia]
----
include("analysis/radial_distribution_function/radial_distribution_function.jl")
include("radial_distribution_function/radial_distribution_function.jl")
run_radial_distribution_analysis()
----
@ -200,7 +201,7 @@ The output is `exports/graphics/radial_distribution.pdf` and `exports/graphics/r
[source,julia]
----
include("analysis/reward_discount_analysis.jl")
include("reward_discount_analysis.jl")
run_reward_discount_analysis()
----

4
analysis/Manifest.toml
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@ -1177,9 +1177,9 @@ version = "0.4.3"
[[deps.ReCo]]
deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
repo-rev = "main"
repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
repo-url = ".."
uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
version = "0.5.0"

4
graphics/CairoMakie_graphics/Manifest.toml
View file

@ -1136,9 +1136,9 @@ version = "0.4.3"
[[deps.ReCo]]
deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
repo-rev = "main"
repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
repo-url = "../.."
uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
version = "0.5.0"

4
graphics/Luxor_graphics/Manifest.toml
View file

@ -931,9 +931,9 @@ version = "1.5.3"
[[deps.ReCo]]
deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
repo-rev = "main"
repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
repo-url = "../.."
uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
version = "0.5.0"

2
graphics/Luxor_graphics/center_of_mass.jl
View file

@ -33,7 +33,7 @@ function gen_COM_graphics()
##
graphics_export_dir = "exports/graphics/COM"
graphics_export_dir = "../../exports/graphics/COM"
mkpath(graphics_export_dir)
Drawing(box_length, box_height, "$graphics_export_dir/linear.pdf")

2
graphics/Luxor_graphics/periodic_boundary_conditions.jl
View file

@ -9,7 +9,7 @@ function gen_periodic_boundary_conditions_graphics()
drawing_box_length = 300
graphics_export_dir = "exports/graphics"
graphics_export_dir = "../../exports/graphics"
mkpath(graphics_export_dir)
Drawing(

2
graphics/Luxor_graphics/radial_distribution.jl
View file

@ -9,7 +9,7 @@ function gen_rdf_graphics()
box_length = 100
graphics_export_dir = "exports/graphics"
graphics_export_dir = "../../exports/graphics"
mkpath(graphics_export_dir)
Drawing(box_length, box_length, "$graphics_export_dir/rdf_shells.pdf")

2
graphics/Luxor_graphics/verlet_and_cell_lists.jl
View file

@ -9,7 +9,7 @@ function gen_verlet_and_cell_lists_graphics()
box_length = 100
graphics_export_dir = "exports/graphics"
graphics_export_dir = "../../exports/graphics"
mkpath(graphics_export_dir)
Drawing(box_length, box_length, "$graphics_export_dir/verlet_and_cell_lists.pdf")

2
performance/Benchmark.jl
View file

@ -26,7 +26,7 @@ function run_benchmarks(
display(benchmark)
open("exports/benchmark.txt", "a+") do f
open("../exports/benchmark.txt", "a+") do f
JSON3.pretty(
f,
Dict(

4
performance/Manifest.toml
View file

@ -965,9 +965,9 @@ version = "1.5.3"
[[deps.ReCo]]
deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
repo-rev = "main"
repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
repo-url = ".."
uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
version = "0.5.0"

2
scripts/projects.txt
View file

@ -1,7 +1,7 @@
.
test
analysis
graphics/CairoMakie_graphics
graphics/Luxor_graphics
performance
test
visualization

4
scripts/update.jl
View file

@ -2,9 +2,11 @@ using Pkg: Pkg
function update()
projects = readlines("scripts/projects.txt")
base_dir = pwd()
for project in projects
Pkg.activate(project)
cd(joinpath(base_dir, project))
Pkg.activate(".")
Pkg.update()
end

1
visualization/Animation.jl
View file

@ -54,7 +54,6 @@ function animate_bundle!(args, sim_consts::ReCo.SimConsts)
end
if args.n_bundle == 1 && bundle_snapshot == 1
println("OK")
scatter!(
args.ax,
args.particle_xs,

4
visualization/Manifest.toml
View file

@ -1172,9 +1172,9 @@ version = "0.4.3"
[[deps.ReCo]]
deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
repo-rev = "main"
repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
repo-url = ".."
uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
version = "0.5.0"

2
visualization/common_CairoMakie.jl
View file

@ -22,7 +22,7 @@ function set_gaps!(fig::Figure)
return nothing
end
function save_fig(filename::String, fig::Figure; parent_dir="exports/graphics")
function save_fig(filename::String, fig::Figure; parent_dir="../exports/graphics")
mkpath(parent_dir)
save("$parent_dir/$filename", fig; pt_per_unit=1)