mo8it/ReCo.jl
1
0
Fork 0
mirror of https://gitlab.rlp.net/mobitar/ReCo.jl.git synced 2024-12-04 23:50:31 +00:00
Code Issues Releases Activity

Fix deps and path to exports

Browse source
This commit is contained in:
Mo 2022-09-25 17:56:00 +02:00
parent d73cd9b8d9
commit bea854f360
15 changed files with 29 additions and 27 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

17
README.adoc
View file

@ -38,8 +38,9 @@ If specified otherwise, an environment in a subdirectory has to be activated ins
[source,julia]
----
cd("SUBDIRECTORY")
using Pkg
Pkg.activate("SUBDIRECTORY")
Pkg.activate(".")
----
=== Install/update dependencies
@ -97,7 +98,7 @@ To generate an animation of a simulation, run the following:
[source,julia]
----
include("visualization/Animation.jl")
include("Animation.jl")
using .Animation
animate(sim_dir)
----
@ -110,7 +111,7 @@ To plot only one snapshot of a simulation, run the following:
[source,julia]
----
include("visualization/SnapshotPlot.jl")
include("SnapshotPlot.jl")
using .SnapshotPlot
plot_snapshot(sim_dir)
----
@ -152,7 +153,7 @@ To plot the rewards, activate the environment of the subdirectory `visualization
[source,julia]
----
include("visualization/RewardsPlot.jl")
include("RewardsPlot.jl")
using .RewardsPlot
plot_rewards(rl_dir)
----
@ -165,7 +166,7 @@ To plot the mean of kappa as the ratio of the eigenvalues of the gyration tensor
[source,julia]
----
include("analysis/mean_kappa.jl")
include("mean_kappa.jl")
plot_mean_κ(; rl_dir=rl_dir, n_last_episodes=N_LAST_EPISODES)
----
@ -179,7 +180,7 @@ First, activate the environment of the subdirectory `analysis`.
[source,julia]
----
include("analysis/mean_squared_displacement.jl")
include("mean_squared_displacement.jl")
run_msd_analysis()
run_random_walk()
----
@ -190,7 +191,7 @@ The output is `exports/graphics/mean_squared_displacement.pdf` and `exports/grap
[source,julia]
----
include("analysis/radial_distribution_function/radial_distribution_function.jl")
include("radial_distribution_function/radial_distribution_function.jl")
run_radial_distribution_analysis()
----
@ -200,7 +201,7 @@ The output is `exports/graphics/radial_distribution.pdf` and `exports/graphics/r
[source,julia]
----
include("analysis/reward_discount_analysis.jl")
include("reward_discount_analysis.jl")
run_reward_discount_analysis()
----

4
analysis/Manifest.toml
View file

@ -1177,9 +1177,9 @@ version = "0.4.3"
[[deps.ReCo]]
deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
repo-rev = "main"
repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
repo-url = ".."
uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
version = "0.5.0"

4
graphics/CairoMakie_graphics/Manifest.toml
View file

@ -1136,9 +1136,9 @@ version = "0.4.3"
[[deps.ReCo]]
deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
repo-rev = "main"
repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
repo-url = "../.."
uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
version = "0.5.0"

4
graphics/Luxor_graphics/Manifest.toml
View file

@ -931,9 +931,9 @@ version = "1.5.3"
[[deps.ReCo]]
deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
repo-rev = "main"
repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
repo-url = "../.."
uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
version = "0.5.0"

2
graphics/Luxor_graphics/center_of_mass.jl
View file

@ -33,7 +33,7 @@ function gen_COM_graphics()
##
graphics_export_dir = "exports/graphics/COM"
graphics_export_dir = "../../exports/graphics/COM"
mkpath(graphics_export_dir)
Drawing(box_length, box_height, "$graphics_export_dir/linear.pdf")

2
graphics/Luxor_graphics/periodic_boundary_conditions.jl
View file

@ -9,7 +9,7 @@ function gen_periodic_boundary_conditions_graphics()
drawing_box_length = 300
graphics_export_dir = "exports/graphics"
graphics_export_dir = "../../exports/graphics"
mkpath(graphics_export_dir)
Drawing(

2
graphics/Luxor_graphics/radial_distribution.jl
View file

@ -9,7 +9,7 @@ function gen_rdf_graphics()
box_length = 100
graphics_export_dir = "exports/graphics"
graphics_export_dir = "../../exports/graphics"
mkpath(graphics_export_dir)
Drawing(box_length, box_length, "$graphics_export_dir/rdf_shells.pdf")

2
graphics/Luxor_graphics/verlet_and_cell_lists.jl
View file

@ -9,7 +9,7 @@ function gen_verlet_and_cell_lists_graphics()
box_length = 100
graphics_export_dir = "exports/graphics"
graphics_export_dir = "../../exports/graphics"
mkpath(graphics_export_dir)
Drawing(box_length, box_length, "$graphics_export_dir/verlet_and_cell_lists.pdf")

2
performance/Benchmark.jl
View file

@ -26,7 +26,7 @@ function run_benchmarks(
display(benchmark)
open("exports/benchmark.txt", "a+") do f
open("../exports/benchmark.txt", "a+") do f
JSON3.pretty(
f,
Dict(

4
performance/Manifest.toml
View file

@ -965,9 +965,9 @@ version = "1.5.3"
[[deps.ReCo]]
deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
repo-rev = "main"
repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
repo-url = ".."
uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
version = "0.5.0"

2
scripts/projects.txt
View file

@ -1,7 +1,7 @@
.
test
analysis
graphics/CairoMakie_graphics
graphics/Luxor_graphics
performance
test
visualization

4
scripts/update.jl
View file

@ -2,9 +2,11 @@ using Pkg: Pkg
function update()
projects = readlines("scripts/projects.txt")
base_dir = pwd()
for project in projects
Pkg.activate(project)
cd(joinpath(base_dir, project))
Pkg.activate(".")
Pkg.update()
end

1
visualization/Animation.jl
View file

@ -54,7 +54,6 @@ function animate_bundle!(args, sim_consts::ReCo.SimConsts)
end
if args.n_bundle == 1 && bundle_snapshot == 1
println("OK")
scatter!(
args.ax,
args.particle_xs,

4
visualization/Manifest.toml
View file

@ -1172,9 +1172,9 @@ version = "0.4.3"
[[deps.ReCo]]
deps = ["CellListMap", "Dates", "Distributions", "Flux", "Intervals", "JLD2", "LaTeXStrings", "LinearAlgebra", "ProgressMeter", "Random", "ReinforcementLearning", "StaticArrays", "UnicodePlots"]
git-tree-sha1 = "42e2dcd54bfde978a7652ad502e981533470aa85"
git-tree-sha1 = "ba8cf7e8c6968aedad9c097aa8559ed054803bde"
repo-rev = "main"
repo-url = "https://gitlab.rlp.net/mobitar/ReCo.jl"
repo-url = ".."
uuid = "b25f7548-fcc9-4c91-bc24-841b54f4dd54"
version = "0.5.0"

2
visualization/common_CairoMakie.jl
View file

@ -22,7 +22,7 @@ function set_gaps!(fig::Figure)
return nothing
end
function save_fig(filename::String, fig::Figure; parent_dir="exports/graphics")
function save_fig(filename::String, fig::Figure; parent_dir="../exports/graphics")
mkpath(parent_dir)
save("$parent_dir/$filename", fig; pt_per_unit=1)